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RotaMol is a user-friendly program that allows rapid analyses of protein size during viewing/editing in PyMOL. Wrote this a while ago and have been coming up with slight improvements every now and then when I get free time, so the source isn’t really "finished", but it works well. This script, named RotaMol, has to be used in conjunction with a protein modelling program called PyMol (not written by me). So if you dont have PyMol you wont be able to test this. Once your protein is loaded into PyMol this script will essentially calculate the area of every face, for a user defined level of accuracy (pixelskip) and angle of rotation. It is then calibrated using the Zoom function in PyMol, and it spits out the average rotational area of the protein in Angstroms squared. Included here is the source, Also is a link to the Google code page where it is hosted for Full .EXE download, as well as all documentation - tutorials - back versions, and a more in depth description of how it works and various links, Download here: http://code.google.com/p/rotamol/downloads/list latest version should be on top Cheers, Sebastian Eves-van den Akker ===================================================================================================== Any questions about compatibility issues with older PyMOL versions or different language keyboards - don't hesitate to ask! (Preferably by email) RotaMol v1.11 - APBS.au3 RotaMol v1.11 instructions.pdf

Hi all, This is a short and again messy script (as far as the source code is concerned), but its been very very usefull to me over the past 3-4 months so I thought id post it up. simply if you have some DNA sequences with other characters or spaces or /n in it, It will strip it down to the ATGC. you simply highlight and select whatever you want to manipluate, copy it, then press the past from clipboard button to put it into the GUI. (to copy anything out of the GUI simply press the copy button) once in the edit you can do usefull things such as reverse complement, switch all to upper or lower case, and analyse the GC content and possible methylation sites. Included in download is the source and the icon, so it can be compiled whenever. Any suggestions as to what else would be usefull to add would be greatly appreciated. Cheers Sebastian Eves-van den Akker. GC autoit.zip